Genetic Diversity of Payo (Oryza sativa L.) Local Rice Population in Kerinci Regency Jambi Province Based on Morphological Markers
Diversitas Genetik Populasi Padi (Oryza sativa L.) Payo di Kabupaten Kerinci Provinsi Jambi Berdasarkan Marka Morfologi
DOI:
https://doi.org/10.33019/agrosainstek.v4i1.130Keywords:
Diversity, Genetic, Marker, Morphology, Payo riceAbstract
Payo rice is one of the local rice varieties from Kerinci, Jambi Province. It is popular in Jambi due to its texture and good taste qualities. Farmer preferences changing to modern varieties and massive infrastructure development lead to Payo rice extinction. This research was aimed to find out the genetic diversity of Payo rice population-based on morphological markers in Kerinci area. Non-experimental research was conducted to obtain the data by direct survey or in situ characterization. Samples were determined using the proportionate stratified random sampling method. Morphological characters were measured both quantitatively and qualitatively based on IRRI and WARDA guidelines with few modifications. Quantitative data were analyzed using the coefficient of variability, while qualitative data were analyzed using relative diversity index (J). Genetic diversity among individual members of the population was analyzed using cluster analysis and presented in a dendrogram. Results indicated that several morphological characters, which were number of productive tillers, angle of flag leaf, threshability, number of empty grain, color of ligule, color of auricle, leaf surface, and color of grain, showed large variability, while others were narrow. Overall, relatively large genetic diversity was observed in Payo rice population in Kerinci area. At least 21 different genotypes were identified in the existing population.
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References
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Suryanugraha WA, Supriyatna, Kristamtini. 2017. Keragaan Sepuluh Kultivar Padi Lokal (Oryza sativa L.) Daerah Istimewa Yogyakarta. Vegetalika. 6(4): 55-7.
Aravanopoulos FA. 2011. Genetic Monitoring in Natural Perennial Plant Populations. Botany. 89. 75-81.
Aravanopoulos FA, Tollefsrud MM, Graudal L, Koskela J, Kätzel R, Soto A, Nagy L, Pilipovic A, Zhelev P, Božic G, Bozzano M. 2015. Development of Genetic Monitoring Methods for Genetic Conservation Units of Forest Trees in Europe. European Forest Genetic Resources Programme (EUFORGEN), Bioversity International, Rome, Italy.
Bobihoe J, Hernita D, Salvia E, Hayanti SY. 2017. Keragaman Sumber Daya Genetik Spesifik Jambi. Balai Pengkajian Teknologi Pertanian (BPTP), Jambi.
Falconer DS, Mackay TFC.1996. Introduction to Quantitative Genetics. (4th edn.), Longman, Essex, UK.
Balitbangda. 2015. Buku Persyaratan Indikasi Geografis Padi Payo. Tidak dipublikasikan
Bhandari HR, Bhanu AN, Srivastava K, Singh MN, Shreya, Hemantaranjan A. 2017. Assessment of Genetic Diversity in Crop Plants - An Overview. Adv Plants Agric Res, 7(3): 00255
Bioversity International, IRRI, WARDA. 2007. Descriptors for Wild and Cultivated Rice (Oryza spp.). Bioversity International, Rome, Italy; International Rice Research Institute, Los Banos, Philippines; WARDA, Africa Rice Center, Cotonou, Benin.
Casañas F, Simó J, Casals J, Prohens J. 2017. Toward an Evolved Concept of Landrace. Front. Plant Scie. 8; 145
Civáň P, Brown TA. 2018. Role of Genetic Introgression During the Evolution of Cultivated Rice (Oryza sativa L.). BMC Evolutionary Biology, 18(1): 57
Coates DJ, Byrne M. 2005. Genetic Variation in Plant Populations : asessing cause and pattern. In: R.J. Henry (Ed). Plant Diversity and Evolution; genotypic and phenotypic variation in higher plants. CAB International.
Frison EA, Cherfas J, Hodgkin T. 2011. Agricultural Biodiversity Is Essential for a Sustainable Improvement in Food and Nutrition Security. Sustainability, 3: 238-253
Gautam PL, Singh BB, Saxena S, Sharma RK. 2004. Collection, Conservation and Utilization of Plant Genetic Resources. In: Jain HK, Kharkwal MC (Eds) Plant Breeding. Springer, Dordrecht .
Govindaraj M, Vetriventhan M, Srinivasan M. 2015. Importance of Genetic Diversity Assessment in Crop Plants and Its Recent Advances: An Overview of Its Analytical Perspectives. Genetics Research International Vol. 2015, Article ID 431487. Hindawi Publishing Corporation.
Hadi RA, Budiasih R. 2015. Variabilitas dan Heritabilitas Karakter Penting Beberapa Genotip Padi Sawah pada Cekaman Salinitas Tinggi. P a s p a l u m, v o l 3(1).
Handayani F, Sumarmiyati, Ahmadi NR. 2017. Keragaman Morfologi 20 Kultivar Padi Lokal Asal Kalimantan Timur. Pros Sem Nas Masy Biodiv Indon, Vol 3 (1) : 88-93
Latpate A. 2019. The Importance of Genetic Variation for Plant Breeding. Research Gate, diakses melalui : https://www.researchgate.net/publication/333264322 , pada 8 April 2020.
Maulana M, Nusifera S, Alia Y, Eliyanti. 2019. Variabilitas Karakter Morfologi pada Populasi Padi Payo di Kabupaten Kerinci. Di dalam: Irianto, Junaedi H, Nusifera S, Fathoni Z (Eds) Prosiding Semirata BKS PTN Wilayah Barat Bidang Ilmu Pertanian, Jambi 27 – 29 Agustus 2019.
Magurran AE. 2004. Meausuring Biological Diversity. Blackwell.
Namira Y, Nuhung IA, Najamuddin M. 2017. Analisis Faktor-faktor yang Mempengaruhi Impor Beras di Indonesia. Jurnal Agribisnis, 11 (6) : 183 – 201.
Pielou EC. 1966. The Measurement of Diversity in Different Types of Biological Collections. J. Theoret. Biol., 13: 131-144.
Qiu J, Zhou Y, Mao L, Ye C, Wang W, Zhang J, Yu Y, Fu F, Wang Y, Qian F, Qi T, Wu S, Sultana MH, Cao YN, Wang Y, Timko MP, Ge S, Fan L, Lu Y. 2017. Genomic Variation Associated with Local Adaptation of Weedy Rice During De-domestication. Nature Communications, 8(1), 1-12.
Rauf S, da Silva, JAT, Khan AA, Naveed A. 2010. Consequences of Plant Breeding on Genetic Diversity. International Journal of Plant Breeding, 4 (1): 1-21
Reagon M, Thurber CS, Olsen KM, Jia Y, Caicedo AL.2011. The Long and The Short of It: SD1 Polymorphism and The Evolution of Growth Trait Divergence in US Weedy Rice. Mol. Ecol. 20:3743–3756.
Reed DH, Frankham R. 2001. How Closely Correlated Are Molecular Marker and Quantitative Measures of Genetic Variation? A Meta-analysis. Evolution, 55 (6) : 1095 – 1103.
Rohaeni WR, Yuliani D. 2019. Keragaman Morfologi Daun Padi Lokal Indonesia dan Korelasinya dengan Ketahanan Penyakit Hawar Daun Bakteri. Jurnal Ilmu Pertanian Indonesia (JIPI), Vol. 24 (3): 258-266
Sobrizal. 2016. Potensi Pemuliaan Mutasi untuk Perbaikan Varietas Padi Lokal Indonesia. Jurnal Ilmiah Aplikasi Isotop dan Radiasi, Vol. 12 No. 1 Juni 2016
Sohrabi M, Rafii MY, Hanafi MM, Nor Akmar AS, Latif MA.2012. Genetic Diversity of Upland Rice Germplasm in Malaysia Based on Quantitative Traits. The ScientificWorld Journal Volume 2012, Article ID 416291.
Suryanugraha WA, Supriyatna, Kristamtini. 2017. Keragaan Sepuluh Kultivar Padi Lokal (Oryza sativa L.) Daerah Istimewa Yogyakarta. Vegetalika. 6(4): 55-7.
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Published
2020-06-30
How to Cite
Nusifera, S. (2020) “Genetic Diversity of Payo (Oryza sativa L.) Local Rice Population in Kerinci Regency Jambi Province Based on Morphological Markers: Diversitas Genetik Populasi Padi (Oryza sativa L.) Payo di Kabupaten Kerinci Provinsi Jambi Berdasarkan Marka Morfologi”, AGROSAINSTEK: Jurnal Ilmu dan Teknologi Pertanian, 4(1), pp. 61–69. doi: 10.33019/agrosainstek.v4i1.130.
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